Datasets

This section presents a curated list of data generated in the course of my experiments. Internal and external published datasets are presented in the first two tables alongside the PMID linking to the publication.

The last table presents a list of yet unpublished experiments for which analysis work is (slowly) ongoing. Primary data is available on request

Internal Published Datasets

id	Experiment	date	PMID	Collaborator	Sequencing Center
14	sae2∆ CPT suppressors		25899817	Tobias Oelschlaegel	Sanger
3	tof1∆ CPT suppressors	2013-07-20	28389464	Fabio Puddu	Sanger
4	rad50S CPT suppressors (multidrug resistance)		29670134	Ilaria Guerini	Sanger
13	tof1∆ CPT suppressors (EMS mutagenesis)		29670134	Fabio Puddu	Sanger
15	rtt107∆ CPT suppressors (EMS mutagenesis)		29670134	Fabio Puddu	Sanger
58	Sae2_point_mutants_CPT		29670134	Carmen Diaz Soria	Sanger
19	sae2∆tel1∆mre11-H37R CPT suppressors	2014-10-15	29670134	Nicola Geisler	Sanger
11	rDNA calibration measures		31511699	Fabio Puddu	Sanger
23	Yeast KO collection sequencing		31511699	Fabio Puddu	Sanger
25	mtDNA variation after genotoxin treatment		31511699	Mareike Herzog	Sanger
27	Wild-type strains		31511699	Fabio Puddu	Sanger
32	rDNA locus measurement in RNAp1 and RNAp3 ts mutants		31511699	Fabio Puddu	Sanger
33	mtDNA changes after RNR overexpression		31511699	Fabio Puddu	Sanger
9	Genome stability KOs propagation 25 passages (collab.)	2014-04-01	32968016	Alain Nicolas	Sanger
10	Genome stability KOs propagation 100 passages (collab.)	2014-04-01	32968016	Alain Nicolas	Sanger
67	Genome stability KO in BY/SK1 hybrid background propagation	2016-12-13	32968016	Alain Nicolas	Curie
42	pol2 heterozygous mutants manual propagation (I)		33764464	Mareike Herzog	Sanger
43	pol2 heterozygous mutants manual propagation (II)		33764464	Mareike Herzog	Sanger
49	pol2 heterozygous mutants manual propagation (III)		33764464	Mareike Herzog	Sanger
54	pol2 heterozygous mutants automated propagation (I)		33764464	Mareike Herzog	Sanger

External Published Datasets

id	Experiment	date	PMID	Lab of Origin	Sequencing Center
1003	pol1/pol2/pol3 mmr- propagation		25217194	Tom Kunkel	External
1000	HAP1 cell isolates		25373145	External	External
1002	RPE-1 cell isolates	2019-09-22	26017310	External	External
1001	pol2-M644G_rnh201_delta	2019-06-25	26400612	Tom Kunkel	External

Internal Unpublished Datasets

id	Experiment	date	Collaborator	Sequencing Center
12	DDR gene KOs propagation (automated, pilot)	2013-12-31	Fabio Puddu	Sanger
28	Effect of H4K16 mutants on genome stability		FabioPuddu	Sanger
62	Essential genes suppressors (pilot)		Fabio Puddu	CRUK-CI
59	Genetic differences between W303 and BY backgrounds	2019-09-18	Fabio Puddu	Sanger
30	Genome instability and proline biosynthesis	2018-12-10	Fabio Puddu	Sanger
8	Genome stability KOs propagation (pilot, manual)	2013-12-21	Nicola Geisler	Sanger
20	H3-R78A phleomycin sensitivity suppressors		Gonzalo Millan-Zambrano	Sanger
7	Ilaria's rad50S+IR;Ilaria's rad50S+CPT(multidrug)		Ilaria Guerini	Sanger
60	K699 nanopore sequencing	2018-11-15	Fabio Puddu	Gurdon
37	Measuring IR-induced mutagenesis in DDR KO strains	2012-08-02	Nicola Geisler	Sanger
56	RNAseH strains diagnostics		Federico Lazzaro	Sanger
70	Sae2_point_mutants_IR		Carmen Diaz Soria	Sanger
69	Sae2_point_mutants_MMS		Carmen Diaz Soria	Sanger
36	Sophie_unpublished_25p		Alain Nicolas	Sanger
68	SwedenPolymerasePropagation_pol3		Mareike Herzog	Sanger
61	Testing Nextera libraries		Phil Zegerman	CRUK-CI
1	Wild-type pilot propagation in the presence of genotoxins	2013-02-28	Mareike Herzog	Sanger
31	Yeast KO collection propagation pools (I)		Fabio Puddu	Sanger
34	Yeast KO collection propagation pools (II)		Fabio Puddu	Sanger
44	Yeast KO collection propagation unpooled		Fabio Puddu	Sanger
38	dna2 pif1-M2 pilot propagation (automated)	2013-12-31	Fabio Puddu	Sanger
29	dna2-td suppressors	2018-12-16	Michele Giannattasio	Sanger
57	dna2-td suppressors		Michele Giannattasio	IFOM
2	mec1-HU-supp	2013-07-20	Fabio Puddu	Sanger
26	mec1_sae2_suppressors	2014-10-15	Fabio Puddu	Sanger
17	mec1∆ CPT suppressors		Tobias Oelschlaegel	Sanger
16	mrc1∆ nicotinamide hypersensitivity suppressors (I)		Fabio Puddu	Sanger
24	mrc1∆ nicotinamide hypersensitivity suppressors (II)		Mareike Herzog	Sanger
46	pilot_propagation_PZ_samples	2013-12-31	Phil Zegerman	Sanger
47	pilot_propagation_custom_strains	2013-12-31	Fabio Puddu	Sanger
18	plb1∆, plb2∆, plb3∆, nte1∆, lro1∆ suppressors of stationary phase lethality	2014-10-15	Symeon Siniossoglou	Sanger
45	pol2 heterozygous mutants pilot propagation	2013-12-31	Mareike Herzog	Sanger
55	pol2-4 rev3 manual propagation		Mareike Herzog	Sanger
65	pol2-4_msh2_combinations		Mareike Herzog	Sanger
64	pol2-L439V_msh2_combinations		Mareike Herzog	Sanger
53	pol3 heterozygous mutants manual propagation (I)		Mareike Herzog	Sanger
50	rDNA dynamics in RNAp1/RNAp3 DAmP mutants		Fabio Puddu	Sanger
51	rDNA dynamics in RNAp1/RNAp3 ts mutants (YPAD plate)		Fabio Puddu	Sanger
5	rad50S IR suppressors		Ilaria Guerini	Sanger
21	rho0 cells propagation		Fabio Puddu	Sanger
22	rho0 cells suppressors		Fabio Puddu	Sanger
6	sae2∆ IR suppressors		Ilaria Guerini	Sanger
66	vid22∆ diagnostics	2017-06-15	Federico Lazzaro	Bari
39	rho0 cells propagation		Fabio Puddu	Sanger
35	rho0 cells suppressors		Fabio Puddu	Sanger
40	Israels_Mutsig_IR_RPE		Israel Salguero	Sanger
52	UV mutation signatures in XP cells	2019-04-30	Ramsay Bowden	Sanger
48	mutation signatures in WRN mutant cells		Rohan Sivapalan	Sanger
41	mutation signatures induced by IR in human RPE cells(2)		Israel Salguero	Sanger
99	MAREIKE LAST IMPORT		Mareike Herzog	Sanger